Genome Project Twenty Years Later: The First 'Human Pangenome'
DOI:
https://doi.org/10.5294/pebi.2023.27.2.1Keywords:
Human genome, pangenome, bioethics, computational biology, biolaw, researchAbstract
La noticia de la conclusión del primer pangenoma humano ocurre veinte años después de que se haya podido contar con una versión de referencia, de la información genética completa, de la especie humana. Las limitaciones técnicas de ese tiempo permitieron que esa versión tuviera errores y varias lagunas de la información genética. Ahora, es posible contar con un nuevo atlas gigante con información que permite evidenciar la gran diversidad genética de la especie humana. Este trabajo está siendo realizado por el Consorcio Internacional de Referencia del Pangenoma Humano, del que hacen parte cerca de cien investigadores y está financiado por el Instituto Nacional de Investigación del Genoma Humano y por los Institutos Nacionales de Salud de Estados Unidos. Este escrito describe a grandes rasgos en qué consiste el proyecto, cuáles son sus aplicaciones posibles y las dificultades técnicas que tiene actualmente. Se repasan también algunos aspectos éticos y jurídicos y se dan pautas para su culminación: profundizar en la reflexión ética de los problemas que se generan; cuidar la formación en ética de la investigación, bioética e integridad científica en todos los actores del proceso; no perder de vista la Declaración Universal sobre el genoma humano y los Derechos Humanos de la UNESCO; orientar los desarrollos de la bioinformática, para que los datos obtenidos se manejen de una mejor manera; extremar la prudencia en el manejo de esos datos; revisar y reajustar las prioridades que se tienen en la investigación de estas temáticas, entre otros.
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References
National Human Genome Research Institute. June 2000 White House Event [Internet] [Consulta: 19 jun 2023]. Disponible en: https://www.genome.gov/10001356/june-2000-white-house-event
Noble I. Human genome finally complete; 14 abr 2003 [consulta: 19 Jun 2023]. Disponible en: http://news.bbc.co.uk/2/hi/science/nature/2940601.stm
Nurk S et al. The complete sequence of a human genome. Science. 2022;376(6588):44-53. DOI: https://doi.org/10.1126/science.abj6987
Liao WW et al. A draft human pangenome reference. Nature. 2023;617:312-324. DOI: https://doi.org/10.1038/s41586-023-05896-x
Eichler EE et al. Adaptive archaic introgression of copy number variants and the discovery of previously unknown human genes. Science. 2019;366(6463):eaax2083. DOI: https://doi.org/10.1126/science.aax2083
Salzberg SL et al. Assembly of a pan-genome from deep sequencing of 910 humans of African descent. Nat Genet. 2019;51(2):364. DOI: https://doi.org/10.1038/s41588-018-0335-1
Abondio P, Cilli E, Luiselli D. Human pangenomics: promises and challenges of a distributed genomic reference. Life. 2023;13(6):1360. DOI: https://doi.org/10.3390/life13061360
Aneli S, Birolo G, Matullo G. Twenty years of the Human Genome Diversity Project. Hum Popul Genet Genom. 2022;2(4):1-7. DOI: https://doi.org/10.47248/hpgg2202040005
Aganezov S et al. A complete reference genome improves analysis of human genetic variation. Science. 2022;376:eabl3533. DOI: https://doi.org/10.1126/science.abl3533
Miller DE et al. Targeted long-read sequencing identifies missing disease-causing variation. Am J Hum Genet. 2021;108:1436-1449 DOI: https://doi.org/10.1016/j.ajhg.2021.06.006
Logsdon GA, Vollger MR, Eichler EE. Long-read human genome sequencing and its applications. Nat Rev Genet. 2020;21:597-614. DOI: https://doi.org/10.1038/s41576-020-0236-x
Computational Pan-Genomics Consortium. Computational pan-genomics: status, promises and challenges. Brief Bioinform. 2018;19:118-135. DOI: https://doi.org/10.1093/bib/bbw089
Schneider VA, et al. Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly. Genome Res. 2017;27:849-864 (2017). DOI: https://doi.org/10.1101/gr.213611.116
Rhie A. et al. Towards complete and error-free genome assemblies of all vertebrate species. Nature. 2021;592:737-746. DOI: https://doi.org/10.1038/s41586-021-03451-0
Jordan B, Fu Chang TD. Whole-genome association studies for multigenic diseases: ethical dilemmas arising from commercialization- the case of genetic testing for autism. J Med Ethics. 2010;36:440-444. DOI: https://doi.org/10.1136/jme.2009.031385
Human Pangenome Reference Consortium [Internet] [consulta: 21 jun 2023]. Disponible en: https://humanpangenome.org/
National Human Genome Research Institute. Ethical, legal and social implications research program [Internet] [Consulta: 21 jun 2023]. Disponible en: https://www.genome.gov/Funded-Programs-Projects/ELSI-Research-Program-ethical-legal-social-implications
National Human Genome Research Institute. Report on the Joint NIH/DOE Committee to evaluate the ethical, legal, and social implications program of the Human Genome Project [Internet] [Consulta: 21 jun 2023]. Disponible en: https://www.genome.gov/10001745/elsi-evaluation-report
Green ED, et al. Strategic vision for improving human health at the forefront of genomics. Nature. 2020;586:683-692. DOI https://doi.org/10.1038/s41586-020-2817-4
Naciones Unidas. La Declaración Universal de Derechos Humanos [Internet] [Consulta: 21 jun 2023]. Disponible en: https://www.un.org/es/about-us/universal-declaration-of-human-rights
Naciones Unidas. Declaración Universal sobre el Genoma Humano y los Derechos Humanos [Internet] [Consulta: 21 jun 2023]. Disponible en: https://www.ohchr.org/es/instruments-mechanisms/instruments/universal-declaration-human-genome-and-human-rights
Schatz MC, et al. Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space. Cell Genom. 2022;2:100085. DOI: https://doi.org/10.1016/j.xgen.2021.100085
Horton R, Lucassen A. Ethical considerations in research with genomic data. New Bioeth. 2023;29(1):37-51. DOI: https://doi.org/10.1080/20502877.2022.2060590
Bélisle-Pipon JC, et al. Genetic testing, insurance discrimination and medical research: what the United States can learn from peer countries. Nat. Med. 2019;25:1198-204. DOI: https://doi.org/10.1038/s41591-019-0534-z
Chapman CR, et al. Genetic discrimination: emerging ethical challenges in the context of advancing technology. J Law Biosci. 2020;7:lsz016. DOI: https://doi.org/10.1093/jlb/lsz016
Rego S, et al. Informed consent in the genomics era. Cold Spring Harbor Perspectives in Medicine. 2020;10:a036582. DOI: https://doi.org/10.1101/cshperspect.a036582
Thorogood A, Chokoshvili D. Ethical and legal considerations in genomic data sharing: evolution of the discourse and the road ahead. En: Handbook of bioethical decisions. Cham: Springer; 2023. pp. 345-69. DOI: https://doi.org/10.1007/978-3-031-29451-8_19
Dodson M, Williamson R. Indigenous peoples and the morality of the Human Genome Diversity Project. J Med Ethics. 1999;25(2):204-08. DOI: https://doi.org/10.1136/jme.25.2.204
Couzin-Frankel J. Ethics. DNA returned to tribe, raising questions about consent. Science. 2010;328(5978):558. DOI: https://doi.org/10.1126/science.328.5978.558
Devaney SA, Malerba L, Manson SM. The “All of Us” Program and Indigenous Peoples. N Engl J Med. 2020;383(19):1892. DOI: https://doi.org/10.1056/NEJMc2028907
Schroeder D, et al. Exploitation risks in collaborative international research. En: Equitable research partnerships. Springer Briefs in Research and Innovation Governance. Cham: Springer; 2019. pp. 37-50. DOI: https://doi.org/10.1007/978-3-030-15745-6_5
Braunack-Mayer A, et al. Ethical issues in big data: a qualitative study comparing responses in the health and higher education sectors. PLoS One. 2023;18(4):e0282285. DOI: https://doi.org/10.1371/journal.pone.0282285
Mittelstadt BD, Floridi L. The ethics of big data: current and foreseeable issues in biomedical contexts. Sci Eng Ethics. 2016; 22(2):303-41. DOI: https://doi.org/10.1007/s11948-015-9652-2
Joly Y, Dalpe G. Genetic discrimination still casts a large shadow in 2022. Eur J Hum Genet. 2022;30(12):1320-322. DOI: https://doi.org/10.1038/s41431-022-01194-8
Rehm HL, et al. GA4GH: international policies and standards for data sharing across genomic research and healthcare. Cell Genomics. 2021;1(2):1-33. DOI: https://doi.org/10.1016/j.xgen.2021.100029
Du L, Lin S, Kamenova K. Framing ethical concerns and attitudes towards human gene patents in the Chinese press. Asian Bioeth Rev. 2020;12(3):307-23. DOI: https://doi.org/10.1007/s41649-020-00136-0
Dhirani LL, et al. Ethical dilemmas and privacy issues in emerging technologies: a review. Sensors. 2023;23(3):1151. DOI: https://doi.org/10.3390/s23031151
Tozzo P, et al. Skin microbiome analysis for forensic human identification: what do we know so far? Microorganisms. 2020;8(6):873. DOI: https://doi.org/10.3390/microorganisms8060873
Koplin JJ, Skeggs J, Gyngell C. Ethics of buying DNA. Journal of Bioethical Inq. 2022;19(3):395-406. DOI: https://doi.org/10.1007/s11673-022-10192-w
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